Spades-day2-pc.rar ✦ Fast & Trusted

Always prioritize scaffolds.fasta for your "Day 2" analysis. Scaffolds use paired-end read information to bridge gaps between contigs, providing a more complete picture of the genome. Common Workshop Workflow for Day 2

Activating the specific environment (e.g., conda activate micro612 ). SPADES-Day2-pc.rar

Running the spades.py command on the cleaned "Day 2" datasets. Always prioritize scaffolds