Use the SRA Toolkit to fetch the data: prefetch --option-file accessions.txt
Information on library strategy (e.g., RNA-Seq, WGS), layout (Single vs. Paired-end), and platform (e.g., Illumina).
📊 Dataset Update: Genomic Run Metadata ( SRR5273-653_688.csv ) SRR5273-653_688.csv
If you are planning to process these samples, you can use this file to automate data retrieval:
Extract the raw reads for alignment or variant calling: fasterq-dump --split-files --outdir ./raw_data accessions.txt Use the SRA Toolkit to fetch the data:
Use a simple command to pull the SRR IDs for bulk downloading: cut -f 1 -d ',' SRR5273-653_688.csv > accessions.txt
This CSV file contains the exported metadata for SRA accessions . These records are part of the public Sequence Read Archive (SRA) , which stores raw high-throughput sequencing data. 📂 File Contents These records are part of the public Sequence
Metadata linking the sequences to specific BioProjects or BioSamples. 🛠️ Quick Start: Using this CSV